bioinfo@ird.fr

Software installations in April 2021

The following software have been installed in April:

  • iqtree
    version: 2.1.2
    Description: Efficient software for phylogenomic inference
    URL: http://www.iqtree.org/
    Command to load its environment: module load bioinfo/iqtree/2.1.2

  • phame
    version: 1.0.2
    Description: Phylogenetic and Molecular Evolution (PhaME) analysis tool allows suite of analysis pertaining to phylogeny and moleuclar evolution.
    URL: https://phame.readthedocs.io/en/latest/index.html
    Command to load its environment: module load bioinfo/phame/1.0.2

  • KMC
    version: 3.0.0
    Description: K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects
    URL: http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=kmc&subpage=about
    Command to load its environment: module load bioinfo/KMC/3.0.0