Tutorials

Howtos for the i-Trop Cluster

Tutorial describing the use of the i-Trop cluster

By Ndomassi TANDO | 01/02/2024

Howto add ssh keys on your computer

how to add ssh keys on your computer to conncet remote servers without password

By Ndomassi TANDO | 06/02/24

How to reserve cluster resources

This page describes the main commands needed to allocate resources in cluster.

By Christine. Tranchant-Dubreuil et Julie Orjuela-Bouniol

HPC Connection

How connect on HPC

By christine Tranchant-Dubreuil | 11/03/2018

Slurm

Use of Slurm on the i-Trop cluster.

Par Ndomassi TANDO | 08/11/2019

Linux tutorial

By christine Tranchant-Dubreuil | 20/10/2018

R Survival Manual

R tutorial

By christine Tranchant-Dubreuil | 21/09/2018

Polymorphism detection

Polymorphism detection from fastq files on a linux terminal

By christine Tranchant-Dubreuil | 10/03/2017

vcfExtract

Commands to manipulate VCF files

By christine Tranchant-Dubreuil | 25/03/2018

FROGs in command line

This page describes how to launch FROGs in command line from IRD cluster.

By Julie ORJUELA | 22/03/2019

Qiime2 in command line

Metabarcoding using Qiime2 and DADA2

By Marie Simonin and Julie Orjuela | 22/03/2019

Assembly with Trinity

De novo transcriptome assembly and functional annotation of transcrits.

By Julie Orjuela | 10/08/2018

GPU

Know how to use GPU node in I-Trop cluster
By Julie ORJUELA and Aurore COMTE | 27/01/2020

Git for dummies

Git tutorial

By Christine Tranchant-Dubreuil | 10/03/2017

Docker for dumpies

This page describes describes the main commands you need in order to use Docker.

By Christine Tranchant-Dubreuil

How to choose specific node features

Know how to How to choose specific node features with --constraint option

By Ndomassi TANDO | 01/02/2024

How to use the infiniband network

Know how to use the infiniband network to transfer your data faster from/to the san

By Ndomassi TANDO | 01/02/2024