FAQ
You need 2 scripts located in /opt/scripts/scratch-scripts/
sh /opt/scripts/scratch-scripts/scratch_use.sh and follow the instructions
sh /opt/scripts/scratch-scripts/clean_scratch.sh and follow the instructions
Your data contained in the temporary /scratch spaces of nodes are automatically deleted after 45 days on the nodes of the long partition. On the nodes of other partitions, your data contained in the nodes’ temporary /scratch spaces are automatically deleted after 30 days. However, remember to delete your data on the /scratch nodes when they are no longer in use.
Access to the GPU partition is restricted. A reasoned request must be made by a holder of one of the UMRs on the board here: https://itrop.ird.fr/glpi/plugins/formcreator/front/formdisplay.php?id=15 In case of acceptance, your access is valid for 3 months. Once you have been added to the gpu_group, use the following options to use the gpu partition: -p gpu -A gpu_group For example, to open an interactive session on node 26: srun -p gpu -A gpu_group
In order to distribute the resources among all, each user has the right to launch jobs on 32 cores at the same time. If you need more cores for a limited period of time, you can make a reasoned request to bioinfo@ird.fr which will be able to increase your number of cores temporarily.
Once connected to bioinfo-master.ird.fr, type the command passwd Type the new password and press enter. Enter the password a second time and then press enter. The new password will be propagated to all cluster machines in a few minutes.
To quote us, please copy the following sentence into your publications: “The authors acknowledge the ISO 9001 certified IRD i-Trop HPC (member of the South Green Platform) at IRD montpellier for providing HPC resources that have contributed to the research results reported within this paper. URL: https://bioinfo.ird.fr/- http://www.southgreen.fr”
