{"id":3203,"date":"2021-05-21T11:56:08","date_gmt":"2021-05-21T09:56:08","guid":{"rendered":"https:\/\/bioinfo.ird.fr\/?p=3203"},"modified":"2022-04-06T14:51:24","modified_gmt":"2022-04-06T12:51:24","slug":"software-installations-in-april-2021","status":"publish","type":"post","link":"https:\/\/bioinfo.ird.fr\/index.php\/en\/2021\/05\/21\/software-installations-in-april-2021\/","title":{"rendered":"Software installations in April 2021"},"content":{"rendered":"<p>The following software have been installed in April:<\/p>\n<ul>\n<li>\n<p>iqtree<br \/>\nversion: 2.1.2<br \/>\nDescription: Efficient software for phylogenomic inference<br \/>\nURL: <a href=\"http:\/\/www.iqtree.org\/\">http:\/\/www.iqtree.org\/<\/a><br \/>\nCommand to load its environment: module load bioinfo\/iqtree\/2.1.2<\/p>\n<\/li>\n<li>\n<p>phame<br \/>\nversion: 1.0.2<br \/>\nDescription: Phylogenetic and Molecular Evolution (PhaME) analysis tool allows suite of analysis pertaining to phylogeny and moleuclar evolution.<br \/>\nURL: <a href=\"https:\/\/phame.readthedocs.io\/en\/latest\/index.html\">https:\/\/phame.readthedocs.io\/en\/latest\/index.html<\/a><br \/>\nCommand to load its environment: module load bioinfo\/phame\/1.0.2<\/p>\n<\/li>\n<li>\n<p>KMC<br \/>\nversion: 3.0.0<br \/>\nDescription: K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects<br \/>\nURL: <a href=\"http:\/\/sun.aei.polsl.pl\/REFRESH\/index.php?page=projects&amp;project=kmc&amp;subpage=about\">http:\/\/sun.aei.polsl.pl\/REFRESH\/index.php?page=projects&project=kmc&subpage=about<\/a><br \/>\nCommand to load its environment: module load bioinfo\/KMC\/3.0.0<\/p>\n<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>The following software have been installed in April: iqtree version: 2.1.2 Description: Efficient software for phylogenomic inference URL: http:\/\/www.iqtree.org\/ Command&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/en\/2021\/05\/21\/software-installations-in-april-2021\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":5,"featured_media":3116,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"inline_featured_image":false,"footnotes":""},"categories":[8],"tags":[],"class_list":["post-3203","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-non-classe-en"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - 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