{"id":2829,"date":"2021-04-01T15:30:21","date_gmt":"2021-04-01T13:30:21","guid":{"rendered":"https:\/\/bioinfo.ird.fr\/?p=2829"},"modified":"2022-04-06T14:51:25","modified_gmt":"2022-04-06T12:51:25","slug":"software-installations-in-march-2021","status":"publish","type":"post","link":"https:\/\/bioinfo.ird.fr\/index.php\/en\/2021\/04\/01\/software-installations-in-march-2021\/","title":{"rendered":"Software installations in March 2021"},"content":{"rendered":"<p>The following softwares have been installed in march:<\/p>\n<ul>\n<li>\n<p>kraken2<br \/>\nversion: 2.1.1<br \/>\ndescription: The second version of the Kraken taxonomic sequence classification system<br \/>\nURL: <a href=\"https:\/\/github.com\/DerrickWood\/kraken2\">https:\/\/github.com\/DerrickWood\/kraken2<\/a><\/p>\n<\/li>\n<li>\n<p>gatk<br \/>\nversion: 4.2.0.0<br \/>\ndescription: The GATK is a structured software library that makes writing efficient analysis tools using next-generation sequencing data very easy<br \/>\nURL: <a href=\"http:\/\/www.broadinstitute.org\/gsa\/wiki\/index.php\/Downloading_the_GATK\">http:\/\/www.broadinstitute.org\/gsa\/wiki\/index.php\/Downloading_the_GATK<\/a><\/p>\n<\/li>\n<li>\n<p>fastq-pair:<br \/>\nversion: 1.0<br \/>\ndescription: fastq-pair: efficient synchronization of paired-end fastq files.<br \/>\nURL: <a href=\"https:\/\/anaconda.org\/bioconda\/fastq-pair\">https:\/\/anaconda.org\/bioconda\/fastq-pair<\/a><\/p>\n<\/li>\n<li>\n<p>happy:<br \/>\nversion: 0.1<br \/>\ndescription: Easy haploidy estimation.<br \/>\nURL: <a href=\"https:\/\/github.com\/AntoineHo\/HapPy\">https:\/\/github.com\/AntoineHo\/HapPy<\/a> <\/p>\n<\/li>\n<li>\n<p>OMTools:<br \/>\nversion: 1.4.1a<br \/>\ndescription: A software package for optical mapping data processing, analysis and visualization<br \/>\nURL: <a href=\"https:\/\/github.com\/TF-Chan-Lab\/OMTools\">https:\/\/github.com\/TF-Chan-Lab\/OMTools<\/a><\/p>\n<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>The following softwares have been installed in march: kraken2 version: 2.1.1 description: The second version of the Kraken taxonomic sequence&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/en\/2021\/04\/01\/software-installations-in-march-2021\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":5,"featured_media":3116,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"inline_featured_image":false,"footnotes":""},"categories":[8],"tags":[],"class_list":["post-2829","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-non-classe-en"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - 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