{"id":975,"date":"2020-11-09T15:38:51","date_gmt":"2020-11-09T14:38:51","guid":{"rendered":"https:\/\/itrop.ird.fr\/wordpress\/?page_id=975"},"modified":"2022-04-06T14:48:56","modified_gmt":"2022-04-06T12:48:56","slug":"trainings-2019-galaxy","status":"publish","type":"page","link":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-galaxy\/","title":{"rendered":"Trainings 2019 &#8211; Galaxy"},"content":{"rendered":"<h2>Galaxy<\/h2>\n<table class=\"table-contact\">\n<tr>\n<td><img decoding=\"async\" width=\"150%\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/trainings-galaxy.png\" alt=\"\" \/>\n<\/td>\n<td>\nThis course is an introduction to the Galaxy environment. <br \/>\nGalaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.\n<\/td>\n<\/tr>\n<\/table>\n<h3>Prerequisites<\/h3>\n<p>No experience required<\/p>\n<div id=\"colonne1\">\n<h3>Program<\/h3>\n<ul>\n<li> Data upload, histories and data formats<\/li>\n<li> My first analyses with Galaxy<\/li>\n<li> My first workflow with Galaxy<\/li>\n<li> How to share my work<\/li>\n<li> Concrete application: from raw reads to SNPs<\/li>\n<\/ul>\n<\/div>\n<div id=\"colonne2\">\n<h3>Learning objectives<\/h3>\n<ul>\n<li> Familiarize yourself with the basics of Galaxy <\/li>\n<li> Learn how to run tools <\/li>\n<li> Learn how histories work <\/li>\n<li> Learn how to create a workflow <\/li>\n<li> Learn how to share your work <\/li>\n<\/ul>\n<\/div>\n<div id=\"colonne3\">\n<h3>Training material<\/h3>\n<ul>\n<li>Slides : <a target=\"_blank\" href=\"https:\/\/southgreenplatform.github.io\/trainings\/\/files\/Galaxy\/2019\/Galaxy%202019.pdf\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<p><!--\n\n<li>Practice : <a target=\"_blank\" href=\"{{ site.url }}\/linux\/galaxyPractice\" rel=\"noopener noreferrer\">see<\/a> <\/li>\n\n--><\/p>\n<li>Galaxy: <a target=\"_blank\" href=\"https:\/\/itrop-galaxy.ird.fr\" rel=\"noopener noreferrer\">Go<\/a><\/li>\n<\/ul>\n<\/div>\n<div id=\"nextInline\" class=\"clearfix\">\n<p><iframe loading=\"lazy\" width=\"1280\" height=\"720\" src=\"https:\/\/www.youtube.com\/embed\/Bd7LAw8-eBE\" frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture\" allowfullscreen><\/iframe>\n<\/div>\n<div id=\"nextInline\" class=\"clearfix\">\n<h3>Instructors<\/h3>\n<ul>\n<li>Alexis Dereeper (AD)<\/li>\n<li>Sebastien Ravel (SR)<\/li>\n<li>Christine Tranchant (CT)<\/li>\n<li>Aurore Comte (AC)<\/li>\n<li>Marilyne Summo (MS)<\/li>\n<\/ul>\n<\/div>\n<h3>Trainings<\/h3>\n<table>\n<thead>\n<tr>\n<th><strong>Date<\/strong><\/th>\n<th><strong>Location<\/strong><\/th>\n<th><strong>Topics<\/strong><\/th>\n<th><strong>Participants<\/strong><\/th>\n<th><strong>Instructors<\/strong><\/th>\n<th><strong>Links<\/strong><\/th>\n<th><strong>Units<\/strong><\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td>2019<\/td>\n<td>Montpellier, France<\/td>\n<td>Workflow manager<\/td>\n<td>16<\/td>\n<td>AC, MS, SR<\/td>\n<td><\/td>\n<td>UMR DIADE, IMPE, MIVEGEC, AGAP, TransVIHMi<\/td>\n<\/tr>\n<tr>\n<td>2018<\/td>\n<td>Montpellier, France<\/td>\n<td>Workflow management systems<\/td>\n<td>16<\/td>\n<td>AD, CT, SR<\/td>\n<td><\/td>\n<td>UMR DIADE, IMPE, MIVEGEC, AGAP, TransVIHMi<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>Galaxy This course is an introduction to the Galaxy environment. Galaxy is a scientific workflow, data integration, and data and&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-galaxy\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"inline_featured_image":false,"footnotes":""},"class_list":["post-975","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Trainings 2019 - Galaxy - itrop<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-galaxy\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Trainings 2019 - Galaxy - itrop\" \/>\n<meta property=\"og:description\" content=\"Galaxy This course is an introduction to the Galaxy environment. 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