{"id":966,"date":"2020-11-09T15:21:23","date_gmt":"2020-11-09T14:21:23","guid":{"rendered":"https:\/\/itrop.ird.fr\/wordpress\/?page_id=966"},"modified":"2022-04-06T14:50:07","modified_gmt":"2022-04-06T12:50:07","slug":"trainings-2019-toogle","status":"publish","type":"page","link":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-toogle\/","title":{"rendered":"Trainings 2019 &#8211; TOOGLE"},"content":{"rendered":"<h2>TOOGLE<\/h2>\n<table class=\"table-contact\">\n<tr>\n<td><img decoding=\"async\" width=\"200%\" class=\"img-responsive\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/toggleLogo2.png\" alt=\"\" \/>\n<\/td>\n<td>\nThis course introduces TOGGLe (Toolbox for Generic NGS Analyses), a framework to quickly build pipelines and to perform large-scale NGS analysis through an easy and user-friendly approach. This tools is developed by the Sout Green platform.\n<\/td>\n<\/tr>\n<\/table>\n<p><small>TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses<br \/>\nChristine Tranchant-Dubreuil, Sebastien Ravel, Cecile Monat, Gautier Sarah, Abdoulaye Di- allo, Laura Helou, Alexis Dereeper, Ndomassi Tando, Julie Orjuela-Bouniol, Francois Sabot. bioRxiv https: \/\/www.biorxiv.org\/content\/early\/2018\/01\/10\/245480.<\/p>\n<p><a href=\"http:\/\/toggle.southgreen.fr\">TOGGle website<\/a><\/p>\n<h3>Prerequisites<\/h3>\n<p>Basic knowledge of Linux (Linux for dummies required)<\/p>\n<div id=\"colonne1\">\n<h3>Program<\/h3>\n<ul>\n<li>Why using TOGGLe to analyse NGS data?<\/li>\n<li>How to perform an analysis with TOGGLe?<\/li>\n<li>Creating your own workflow with a simple configuration file<\/li>\n<li>How to execute your own workflow using the command line interface?<\/li>\n<li>Use case<\/li>\n<\/ul>\n<\/div>\n<div id=\"colonne2\">\n<h3>Learning objectives<\/h3>\n<ul>\n<li>Creating your own workflow<\/li>\n<li>Analysing your NGS data with TOGGLe<\/li>\n<\/ul>\n<\/div>\n<div id=\"colonne3\">\n<h3>Training material<\/h3>\n<ul>\n<li>Slides : <a target=\"_blank\" href=\"https:\/\/southgreenplatform.github.io\/trainings\/\/files\/Workflow2019-TOGGLe.pdf\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<li>Exercises : <a target=\"_blank\" href=\"https:\/\/itrop.ird.fr\/wordpress\/index.php\/trainings-2019-toogle-practice\/\" rel=\"noopener noreferrer\">see<\/a><\/li>\n<\/ul>\n<\/div>\n<div id=\"nextInline\" class=\"clearfix\">\n<h3>Instructors<\/h3>\n<ul>\n<li>Christine Tranchant (CT) - christine.tranchant@ird.fr<\/li>\n<li>Sebastien Ravel (SR) - sebastien.ravel@cirad.fr<\/li>\n<\/ul>\n<\/div>\n<h3>Trainings<\/h3>\n<table>\n<thead>\n<tr>\n<th><strong>Date<\/strong><\/th>\n<th><strong>Location<\/strong><\/th>\n<th><strong>Topics<\/strong><\/th>\n<th><strong>Parrticipants<\/strong><\/th>\n<th><strong>Instructors<\/strong><\/th>\n<th><strong>Links<\/strong><\/th>\n<th><strong>Units<\/strong><\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td>2017<\/td>\n<td>Montpellier, France<\/td>\n<td>TOGGLe<\/td>\n<td>20<\/td>\n<td>CT, SR<\/td>\n<td><\/td>\n<td>UMR DIADE, IMPE, MIVEGEC, INTERTRYP<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>TOOGLE This course introduces TOGGLe (Toolbox for Generic NGS Analyses), a framework to quickly build pipelines and to perform large-scale&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-toogle\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"inline_featured_image":false,"footnotes":""},"class_list":["post-966","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Trainings 2019 - TOOGLE - itrop<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-toogle\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Trainings 2019 - TOOGLE - itrop\" \/>\n<meta property=\"og:description\" content=\"TOOGLE This course introduces TOGGLe (Toolbox for Generic NGS Analyses), a framework to quickly build pipelines and to perform large-scale&hellip; 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