{"id":918,"date":"2020-11-09T11:01:03","date_gmt":"2020-11-09T10:01:03","guid":{"rendered":"https:\/\/itrop.ird.fr\/wordpress\/?page_id=918"},"modified":"2022-04-06T14:48:39","modified_gmt":"2022-04-06T12:48:39","slug":"trainings-2019-admin-hpc-module-1-exercices","status":"publish","type":"page","link":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-admin-hpc-module-1\/trainings-2019-admin-hpc-module-1-exercices\/","title":{"rendered":"Trainings 2019 &#8211; Admin HPC &#8211; module 1 &#8211; exercices"},"content":{"rendered":"<h2>HPC Practice<\/h2>\n<table>\n<thead>\n<tr>\n<th style=\"text-align: left;\">Description<\/th>\n<th style=\"text-align: left;\">Exercices pour le Module1 du HPC Admin<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"text-align: left;\">Cours li\u00e9s<\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/itrop.ird.fr\/wordpress\/index.php\/trainings-2019-admin-hpc-module-1\/\">Module1 HPC Admin<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Auteur<\/td>\n<td style=\"text-align: left;\">Ndomassi TANDO (ndomassi.tando@ird.fr)<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Date de cr\u00e9ation<\/td>\n<td style=\"text-align: left;\">27\/09\/2019<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Date de modification<\/td>\n<td style=\"text-align: left;\">27\/09\/2019<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<hr \/>\n<h3>Summary<\/h3>\n<p><!-- TOC depthFrom:2 depthTo:2 withLinks:1 updateOnSave:1 orderedList:0 --><\/p>\n<ul>\n<li><a href=\"#exercice-1\">Exercice 1: Installer centos 7 sur une VM<\/a><\/li>\n<li><a href=\"#exercice-2\">Exercice 2: Ajout d'un disque scratch sur un noeud de calcul<\/a><\/li>\n<li><a href=\"#exercice-3\">Exercice 3: Installation de logiciels<\/a><\/li>\n<li><a href=\"#exercice-4\">Exercice 4: Cr\u00e9ation de Modulefiles<\/a><\/li>\n<li><a href=\"#links\">Links<\/a><\/li>\n<li><a href=\"#license\">License<\/a><\/li>\n<\/ul>\n<hr \/>\n<p><a name=\"exercice-1\"><\/a><\/p>\n<h3>Exercice 1: Installer centos 7 sur une VM<\/h3>\n<p>R\u00e9cup\u00e9rer l'iso de Centos 7 et faire l'installation du syst\u00e8me en suivant la proc\u00e9dure<\/p>\n<hr \/>\n<p><a name=\"Exercice-2\"><\/a><\/p>\n<h3>Exercice 2: Ajout d'un disque scratch sur un noeud de calcul<\/h3>\n<p>Rajouter physiquement un disque dur le node0.<\/p>\n<p>Formater le disque en xfs.<\/p>\n<p>Monter le disque avec le nom \/scratch<\/p>\n<hr \/>\n<p><a name=\">Exercice-3\"><\/a><\/p>\n<h3>Exercice 3: Installation de logiciels<\/h3>\n<p>A partir des sources, installer sur le cluster dans \/usr\/local les logiciels suivants:<\/p>\n<ul>\n<li>gatk 3.3<\/li>\n<li>atropos 1.1.14<\/li>\n<li>picard-tools 1.63<\/li>\n<li>flash 1.2.11<\/li>\n<li>cutadapt 1.2.1<\/li>\n<li>spades 3.13.0<\/li>\n<li>uclust 1.2.22<\/li>\n<li>qiime2<\/li>\n<li>pear 0.9.11<\/li>\n<li>texlive 2017<\/li>\n<li>hisat2 2.0.0<\/li>\n<li>bedtools 2.26.0<\/li>\n<li>perl 5.24.0<\/li>\n<li>R 3.6.1<\/li>\n<li>Rstudio 1.2.5001<\/li>\n<li>Le package R PIVOT: <a href=\"https:\/\/github.com\/qinzhu\/PIVOT\">https:\/\/github.com\/qinzhu\/PIVOT<\/a><\/li>\n<\/ul>\n<hr \/>\n<p><a name=\"exercice-4\"><\/a><\/p>\n<h3>Exercice 4: Cr\u00e9ation de Modulefiles<\/h3>\n<p>Cr\u00e9er les modulefiles des logiciels install\u00e9s pr\u00e9c\u00e9demment<\/p>\n<hr \/>\n<h3>Links<\/h3>\n<p><a name=\"links\"><\/a><\/p>\n<ul>\n<li>Cours li\u00e9s : <a href=\"https:\/\/itrop.ird.fr\/wordpress\/index.php\/trainings-2019-admin-hpc-module-1\">Module1 HPC Admin<\/a><\/li>\n<\/ul>\n<hr \/>\n<h3>License<\/h3>\n<p><a name=\"license\"><\/a><\/p>\n<div>\nThe resource material is licensed under the Creative Commons Attribution 4.0 International License (<a href=\"http:\/\/creativecommons.org\/licenses\/by-nc-sa\/4.0\/\">here<\/a>).<br \/>\n<center><img decoding=\"async\" width=\"25%\" class=\"img-responsive\" src=\"http:\/\/creativecommons.org.nz\/wp-content\/uploads\/2012\/05\/by-nc-sa1.png\"\/><br \/>\n<\/center>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>HPC Practice Description Exercices pour le Module1 du HPC Admin Cours li\u00e9s Module1 HPC Admin Auteur Ndomassi TANDO (ndomassi.tando@ird.fr) Date&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-admin-hpc-module-1\/trainings-2019-admin-hpc-module-1-exercices\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":893,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"inline_featured_image":false,"footnotes":""},"class_list":["post-918","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Trainings 2019 - Admin HPC - module 1 - exercices - itrop<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-admin-hpc-module-1\/trainings-2019-admin-hpc-module-1-exercices\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Trainings 2019 - Admin HPC - module 1 - exercices - itrop\" \/>\n<meta property=\"og:description\" content=\"HPC Practice Description Exercices pour le Module1 du HPC Admin Cours li\u00e9s Module1 HPC Admin Auteur Ndomassi TANDO (ndomassi.tando@ird.fr) Date&hellip; 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