{"id":3270,"date":"2021-10-01T15:40:43","date_gmt":"2021-10-01T13:40:43","guid":{"rendered":"https:\/\/bioinfo.ird.fr\/?page_id=3270"},"modified":"2022-04-06T14:50:26","modified_gmt":"2022-04-06T12:50:26","slug":"trainings-2021-ont-data-analysis","status":"publish","type":"page","link":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2021-ont-data-analysis\/","title":{"rendered":"Trainings 2021 \u2013 ONT data analysis"},"content":{"rendered":"<table class=\"table-contact\">\n<tr>\n<td width=\"40%\"><img decoding=\"async\" width=\"80%\" src=\"https:\/\/bioinfo.ird.fr\/index.php\/en\/trainings-2\/trainings-ont-2\/\" alt=\"\" \/>\n<\/td>\n<td>\n<h1> Introduction to Oxford Nanopore Technology data analyses<\/h1>\n<p>\nThis course offers an introduction to ONT data analysis. <\/p>\n<p>It includes 5 issues: basecalling, reads quality control, assemblies and polishing\/correction, contig quality and structural variants detection.\n<\/td>\n<\/tr>\n<\/table>\n<h3>Prerequisites<\/h3>\n<p>Linux and knowledge of NGS formats <\/p>\n<div id=\"colonne1\">\n<h3>Program<\/h3>\n<ul>\n<li>Introduction to the principles of the technology (kits, flowcell)<\/li>\n<li>Principles of basecalling<\/li>\n<li>Handling mapping and assembly tools suitable for ONT data<\/li>\n<li>How to polish and correct an assembly<\/li>\n<li>Detecting structural variations with long reads<\/li>\n<\/ul>\n<\/div>\n<div id=\"colonne2\">\n<h3>Learning objectives<\/h3>\n<ul>\n<li>Understanding limits and advantages of ONT technology<\/li>\n<li>Manipulating ONT data on a virtual machine on jupyter environment<\/li>\n<li>Handling mapping, assembly, polishing tools and be able to analyse your own data<\/li>\n<li>Detecting structural variations using long reads<\/li>\n<\/ul>\n<\/div>\n<div id=\"colonne3\">\n<h3>Training material<\/h3>\n<ul>\n<li>Slides : <a target=\"_blank\" href=\"https:\/\/southgreenplatform.github.io\/trainings\/\/files\/ont_2021.pdf\" rel=\"noopener\">see<\/a><\/li>\n<li>Practice : <a target=\"_blank\" href=\"https:\/\/github.com\/SouthGreenPlatform\/training_ONT_teaching\/tree\/2021\" rel=\"noopener\">see<\/a> <\/li>\n<\/ul>\n<\/div>\n<div id=\"nextInline\" class=\"clearfix\">\n<h3>Instructors<\/h3>\n<ul>\n<li>Julie Orjuela (JO) - julie.orjuela@ird.fr<\/li>\n<li>Francois Sabot (FS) - francois.sabot@ird.fr <\/li>\n<li>Gautier Sarah (GS) - gautier.sarah@inrae.fr <\/li>\n<\/ul>\n<\/div>\n<h3>Trainings<\/h3>\n<table>\n<thead>\n<tr>\n<th><strong>Date<\/strong><\/th>\n<th><strong>Location<\/strong><\/th>\n<th><strong>Topics<\/strong><\/th>\n<th><strong>Participants<\/strong><\/th>\n<th><strong>Instructors<\/strong><\/th>\n<th><strong>Links<\/strong><\/th>\n<th><strong>Units<\/strong><\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td>2021<\/td>\n<td>Zoom from Montpellier, France<\/td>\n<td>Introduction to ONT data analyses<\/td>\n<td>14<\/td>\n<td>JO, FS, GS<\/td>\n<td><\/td>\n<td>UMR DIADE, AGAP<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>Introduction to Oxford Nanopore Technology data analyses This course offers an introduction to ONT data analysis. It includes 5 issues:&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2021-ont-data-analysis\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":1321,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"inline_featured_image":false,"footnotes":""},"class_list":["post-3270","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Trainings 2021 \u2013 ONT data analysis - itrop<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2021-ont-data-analysis\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Trainings 2021 \u2013 ONT data analysis - itrop\" \/>\n<meta property=\"og:description\" content=\"Introduction to Oxford Nanopore Technology data analyses This course offers an introduction to ONT data analysis. 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