{"id":3073,"date":"2021-03-08T15:49:12","date_gmt":"2021-03-08T14:49:12","guid":{"rendered":"https:\/\/bioinfo.ird.fr\/?page_id=3073"},"modified":"2026-03-13T17:37:39","modified_gmt":"2026-03-13T16:37:39","slug":"trainings-hpc-2","status":"publish","type":"page","link":"https:\/\/bioinfo.ird.fr\/index.php\/en\/trainings-hpc-2\/","title":{"rendered":"Trainings- HPC"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"3073\" class=\"elementor elementor-3073\">\n\t\t\t\t\t\t<div class=\"elementor-inner\">\n\t\t\t\t<div class=\"elementor-section-wrap\">\n\t\t\t\t\t\t\t\t\t<section class=\"has_eae_slider elementor-section elementor-top-section elementor-element elementor-element-2685eaf1 elementor-section-boxed elementor-section-height-default elementor-section-height-default exad-glass-effect-no exad-sticky-section-no\" data-id=\"2685eaf1\" data-element_type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t\t\t<div class=\"elementor-row\">\n\t\t\t\t\t<div class=\"has_eae_slider elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-1ae0e464 exad-glass-effect-no exad-sticky-section-no\" data-id=\"1ae0e464\" data-element_type=\"column\">\n\t\t\t<div class=\"elementor-column-wrap elementor-element-populated\">\n\t\t\t\t\t\t\t<div class=\"elementor-widget-wrap\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-6eeefee0 exad-sticky-section-no exad-glass-effect-no elementor-widget elementor-widget-text-editor\" data-id=\"6eeefee0\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t<div class=\"elementor-text-editor elementor-clearfix\">\n\t\t\t\t<table>\n<tbody>\n<tr>\n<td><img decoding=\"async\" width=\"250%\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/trainings-hpc.jpeg\" alt=\"\">\n<\/td>\n<td>\n<h1>  Cluster i-Trop initiation  <\/h1>\n<p>This course is an introduction to the use of the i-Trop cluster.<br>It is intended for new users with the aim of improving their autonomy in launching their analyses.<br>The notions of Module environment, use in interactive mode, launching jobs in batch mode will be developed.\n<\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<h3>Prerequisites<\/h3>\n<p>Linux Basics<\/p>\n<div>\n<h3>Program<\/h3>\n<ul>\n<li> Cluster Architecture Introduction<\/li>\n<li> Discover the use of Slurm <\/li>\n<li> Datamanagement on the cluster<\/li>\n<li> Interactive mode<\/li>\n<li> Launcing jobs in batch mode<\/li>\n<\/ul>\n<\/div>\n<div>\n<h3>Objectives<\/h3>\n<p>After this courses, attendants will be able to:<\/p>\n<ul>\n<li>Use the cluster ressources in interactive mode<\/li>\n<li>Handle data copies on the cluster<\/li>\n<li>Use the Modules Environment<\/li>\n<li>Launch a simple job in batch mode<\/li>\n<\/ul>\n<\/div>\n<div>\n<h3>Course materials<\/h3>\n<ul>\n<li>Full presentation : <a target=\"_blank\" href=\"https:\/\/itrop.ird.fr\/HPC_Slurm_en.pdf\" rel=\"noopener noreferrer\"> itrop-slurm<\/a><\/li>\n\n<li>Practice : <a target=\"_blank\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/en\/trainings-2019-hpc-practice-slurm\/\" rel=\"noopener noreferrer\"> itrop-slurm<\/a><\/li>\n<li>HowTos : <a target=\"_blank\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/en\/tutorials-howtos-i-trop-cluster\/\" rel=\"noopener noreferrer\"> itrop-slurm<\/a> <\/li>\n<\/ul>\n<\/div>\n<div>\n<h3>Trainers<\/h3>\n<ul>\n<li>Ndomassi Tando (NT) &#8211; ndomassi.tando@ird.fr<\/li>\n<li>Alexis Dereeper (AD) &#8211; alexis.dereeper@ird.fr<\/li>\n<li>Bruno Granouillac (BG) &#8211; bruno.granouillac@ird.fr<\/li>\n<li>Christine Tranchant (CT) &#8211; christine.tranchant@ird.fr<\/li>\n<li>Julie Orjuela (JO) &#8211; julie.orjela@ird.fr <\/li>\n<li>Aurore Comte (AC) &#8211; aurore.comte@ird.fr <\/li>\n<li>Jacques Dainat (JD) &#8211; jacques.dainat@ird.fr<\/li>\n<li>Nicolas Fernandez (NF) &#8211; nicolas.fernandez@ird.fr<\/li>\n<li>Val\u00e9rie Noel (VN) &#8211; valerie.noel@ird.fr<\/li>\n<\/ul>\n<\/div>\n<h3>Trainings<\/h3>\n<table>\n<thead>\n<tr>\n<th><strong>Date<\/strong><\/th>\n<th><strong>Location<\/strong><\/th>\n<th><strong>Topics<\/strong><\/th>\n<th><strong>Participants<\/strong><\/th>\n<th><strong>Instructors<\/strong><\/th>\n<th><strong>Number of trainings<\/strong><\/th>\n<th><strong>Trainers units<\/strong><\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<\/tr>\n<tr>\n<td>2025<\/td>\n<td>IRD Montpellier, France<\/td>\n<td>HPC Introduction<\/td>\n<td>30<\/td>\n<td>NT,NF<\/td>\n<td>\u00a0 \u00a0 \u00a0 7<\/td>\n<td>DIADE, TRANSVHIMI<\/td>\n<\/tr>\n<tr>\n<td>2024<\/td>\n<td>IRD Montpellier, France<\/td>\n<td>HPC Introduction<\/td>\n<td>60<\/td>\n<td>NT,JO,JD,BG,NF<\/td>\n<td>\u00a0 \u00a0 \u00a0 15<\/td>\n<td>DIADE, MIVEGEC,TRANSVHIMI<\/td>\n<\/tr>\n<tr>\n<td>2023<\/td>\n<td>IRD Montpellier, France<\/td>\n<td>HPC Introduction<\/td>\n<td>48<\/td>\n<td>NT,JO,BG<\/td>\n<td>\u00a0 \u00a0 \u00a0 \u00a014<\/td>\n<td>DIADE, MIVEGEC,TRANSVIHMI<\/td>\n<\/tr>\n<tr>\n<td>2022<\/td>\n<td>IRD Montpellier, France<\/td>\n<td>HPC Introduction<\/td>\n<td>56<\/td>\n<td>NT,JO,AD,AC,BG<\/td>\n<td>\u00a0 \u00a0 \u00a0 \u00a017<\/td>\n<td>DIADE, PHIM,MIVEGEC,TRANSVIHMI<\/td>\n<\/tr>\n<tr>\n<td>\u00a02021<\/td>\n<td>IRD Montpellier, France<\/td>\n<td>HPC Introduction<\/td>\n<td>45<\/td>\n<td>NT,JO,VN,BG<\/td>\n<td>\u00a0 \u00a0 \u00a0 \u00a015<\/td>\n<td>\u00a0DIADE, MIVEGEC, TRANSVIHMI<\/td>\n<\/tr>\n<tr>\n<td>\u00a02020<\/td>\n<td>IRD Montpellier, France<\/td>\n<td>HPC Introduction<\/td>\n<td>99<\/td>\n<td>NT,VN<\/td>\n<td>\u00a0 \u00a0 \u00a0 \u00a018<\/td>\n<td>DIADE, MIVEGEC<\/td>\n<\/tr>\n<tr>\n<td><br><\/td>\n<td><\/td>\n<td><\/td>\n<td><\/td>\n<td><\/td>\n<td><\/td>\n<td><br><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\t\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Cluster i-Trop initiation This course is an introduction to the use of the i-Trop cluster.It is intended for new users&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/en\/trainings-hpc-2\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"inline_featured_image":false,"footnotes":""},"class_list":["post-3073","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Trainings- HPC - itrop<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/en\/trainings-hpc-2\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Trainings- HPC - itrop\" \/>\n<meta property=\"og:description\" content=\"Cluster i-Trop initiation This course is an introduction to the use of the i-Trop cluster.It is intended for new users&hellip; 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