{"id":2585,"date":"2021-02-18T11:31:46","date_gmt":"2021-02-18T10:31:46","guid":{"rendered":"https:\/\/itrop.ird.fr\/wordpress\/?page_id=2585"},"modified":"2026-03-18T12:12:39","modified_gmt":"2026-03-18T11:12:39","slug":"trainings-2019-hpc-practice-slurm-fr","status":"publish","type":"page","link":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/","title":{"rendered":"Trainings 2019 &#8211; HPC &#8211; Practice SLURM-fr"},"content":{"rendered":"<h2> Practice initiation cluster i-Trop<\/h2>\n<table>\n<thead>\n<tr>\n<th style=\"text-align: left;\">Description<\/th>\n<th style=\"text-align: left;\">Exercices pour cluster i-Trop<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"text-align: left;\">Cours li\u00e9<\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/itrop.ird.fr\/wordpress\/index.php\/trainings-2019-hpc\/\">HPC<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Auteur<\/td>\n<td style=\"text-align: left;\">Ndomassi TANDO (ndomassi.tando@ird.fr)<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\"> Date de cr\u00e9ation<\/td>\n<td style=\"text-align: left;\">25\/11\/2019<\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Derni\u00e8re date de modification<\/td>\n<td style=\"text-align: left;\">18\/03\/2026<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<hr \/>\n<h3>Sommaire<\/h3>\n<p><!-- TOC depthFrom:2 depthTo:2 withLinks:1 updateOnSave:1 orderedList:0 --><\/p>\n<ul>\n<li><a href=\"#preambule\">Preambule: Logiciel \u00e0 installer pour se connecter \u00e0 un serveur Linux distant <\/a><\/li>\n<li><a href=\"#practice-1\">Practice 1: Se connecter \u00e0 un serveur  Linux via <code>ssh<\/code><\/a><\/li>\n<li><a href=\"#practice-2\">Practice 2: R\u00e9server un coeur d'un noeud en int\u00e9ractif et cr\u00e9er son r\u00e9pertoire de travail <\/a><\/li>\n<li><a href=\"#practice-3\">Practice 3: Transf\u00e9rer des fichiers avec filezilla  et installer vos cl\u00e9s ssh<code>sftp<\/code><\/a><\/li>\n<li><a href=\"#practice-4\">Practice 4: Transf\u00e9rer des donn\u00e9es vers les noeuds <code>scp<\/code><\/a><\/li>\n<li><a href=\"#practice-5\">Practice 5: Utiliser module environment pour charger ses outils<\/a><\/li>\n<li><a href=\"#practice-6\">Practice 6: Lancer des analyses <\/a><\/li>\n<li><a href=\"#practice-7\">Practice 7: Transf\u00e9rer des donn\u00e9es vers le serveur san <code>scp<\/code> <\/a><\/li>\n<li><a href=\"#practice-8\">Practice 8: Supprimer son r\u00e9pertoire temporaire <\/a><\/li>\n<li><a href=\"#practice-9\">Practice 9: Lancer  un job via sbatch<\/a><\/li>\n<li><a href=\"#links\">Lien<\/a><\/li>\n<li><a href=\"#license\">Licence<\/a><\/li>\n<\/ul>\n<hr \/>\n<p><a name=\"pr\u00e9ambule\"><\/a><\/p>\n<h3>Pr\u00e9ambule<\/h3>\n<h5>Se connecter \u00e0 un serveur Linux depuis  Windows <\/h5>\n<table>\n<thead>\n<tr>\n<th style=\"text-align: left;\">Platforme<\/th>\n<th style=\"text-align: left;\">Logiciel<\/th>\n<th style=\"text-align: left;\">Description<\/th>\n<th style=\"text-align: left;\">url<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"text-align: left;\"><img decoding=\"async\" width=\"20%\" class=\"img-responsive\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png\"\/><\/td>\n<td style=\"text-align: left;\">mobaXterm<\/td>\n<td style=\"text-align: left;\">Un terminal avanc\u00e9 pour Windows avec serveur X11 server <\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/mobaxterm.mobatek.net\/\">T\u00e9l\u00e9charger<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\"><img decoding=\"async\" width=\"20%\" class=\"img-responsive\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png\"\/><\/td>\n<td style=\"text-align: left;\">putty<\/td>\n<td style=\"text-align: left;\">Putty permet de se connecter \u00e0 un serveur Linux depuis une machine Windows <\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/www.chiark.greenend.org.uk\/~sgtatham\/putty\/latest.html\">T\u00e9l\u00e9charger<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<h5>Transf\u00e9rer et copier des fichiers depuis votre ordinateur vers des serveurs Linux avec SFTP (SSH File Transfer Protocol) <\/h5>\n<table>\n<thead>\n<tr>\n<th style=\"text-align: left;\">Platforme<\/th>\n<th style=\"text-align: left;\">Logiciel<\/th>\n<th style=\"text-align: left;\">Description<\/th>\n<th style=\"text-align: left;\">url<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"text-align: left;\"><img decoding=\"async\" width=\"10%\" class=\"img-responsive\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osApple.png\"\/> <img decoding=\"async\" width=\"10%\" class=\"img-responsive\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osLinux.png\"\/> <img decoding=\"async\" width=\"10%\" class=\"img-responsive\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png\"\/><\/td>\n<td style=\"text-align: left;\"><img decoding=\"async\" width=\"10%\" class=\"img-responsive\" src=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/filezilla.png\"\/> filezilla<\/td>\n<td style=\"text-align: left;\"> Client FTP et SFTP <\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/filezilla-project.org\/\">T\u00e9l\u00e9charger<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<h5> Visualiser et \u00e9diter des fichiers depuis son ordinateur avant de le transf\u00e9rer vers un serveur Linux distant ou directement depuis le serveur distant<\/h5>\n<table>\n<thead>\n<tr>\n<th style=\"text-align: left;\">Type<\/th>\n<th style=\"text-align: left;\">Logiciel<\/th>\n<th style=\"text-align: left;\">url<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"text-align: left;\">Distant, mode console<\/td>\n<td style=\"text-align: left;\">nano<\/td>\n<td style=\"text-align: left;\"><a href=\"http:\/\/www.howtogeek.com\/howto\/42980\/\">Tutoriel<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Distant, mode console <\/td>\n<td style=\"text-align: left;\">vi<\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/www.washington.edu\/computing\/unix\/vi.html\">Tutoriel<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Distant, mode graphique<\/td>\n<td style=\"text-align: left;\">komodo edit<\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/www.activestate.com\/komodo-ide\/downloads\/edit\">T\u00e9l\u00e9charger<\/a><\/td>\n<\/tr>\n<tr>\n<td style=\"text-align: left;\">Editeur Linux &amp; Windows <\/td>\n<td style=\"text-align: left;\">Notepad++<\/td>\n<td style=\"text-align: left;\"><a href=\"https:\/\/notepad-plus-plus.org\/download\/v7.5.5.html\">T\u00e9l\u00e9charger<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<hr \/>\n<p><a name=\"practice-1\"><\/a><\/p>\n<h3>Practice 1: Se connecter \u00e0 un serveur Linux via <code>ssh<\/code><\/h3>\n<p>Avec mobaXterm:<\/p>\n<ol>\n<li>Cliquer sur le bouton session, puis cliquer sur SSH.\n<ul>\n<li> Dans le champ \"remote host\" , taper: bioinfo-master1.ird.fr<\/li>\n<li>Cocher la case \"specify username\" et entrer votre login<\/li>\n<\/ul>\n<\/li>\n<li>Dans la console, entrer le mot de passe quand demand\u00e9.<br \/>\nAttention pour des raisons de s\u00e9curit\u00e9, le mot de passe n'apparait pas \u00e0 l'\u00e9cran <\/li>\n<li>Taper la commande <code>sinfo<\/code> et commenter le resultat<\/li>\n<li>Taper la commande <code>sinfo -N nodes --long<\/code> et noter les informations suppl\u00e9mentaires<\/li>\n<li>Taper la commande <code>scontrol show nodes<\/code><\/li>\n<\/ol>\n<hr \/>\n<p><a name=\"practice-2\"><\/a><\/p>\n<h3>Practice 2: R\u00e9server un coeur d'un noeud en int\u00e9ractif et cr\u00e9er son r\u00e9pertoire de travail<\/h3>\n<ol>\n<li>Taper la commande <code>squeue<\/code> et noter le r\u00e9sultat<\/li>\n<li>Taper la commande <code>squeue -u your_login<\/code>avec \"your_login\" \u00e0 remplacer avec votre login<\/li>\n<li>Plus de details avec la commande: <code>squeue -O &quot;username,name:40,partition,nodelist,NumCPUs,state,timeused,timelimit&quot;<\/code><\/li>\n<li>Taper la commande <code>hostname<\/code> puis <code>srun hostname<\/code> interpr\u00e9tez les r\u00e9sultats <\/li>\n<li>Taper la commande <code>srun -p short --pty bash -i <\/code> puis <code>squeue<\/code>  <\/li>\n<li>Cr\u00e9er votre propre r\u00e9pertoire dans le \/scratch du noeud:<\/li>\n<\/ol>\n<pre><code> cd \/scratch \nmkdir login\n<\/code><\/pre>\n<p>avec login : le nom de votre choix<\/p>\n<hr \/>\n<p><a name=\"practice-3\"><\/a><\/p>\n<h3>Practice 3 : Transf\u00e9rer des fichiers vers ou depuis bioinfo-san.ird.fr <code>rsync<\/code><\/h3>\n<ol>\n<li>En utilisant rsync, transf\u00e9rer un fichier de votre ordinateur vers votre r\u00e9pertoire <code>\/users\/login<\/code> sur bioinfo-san.ird.fr<\/li>\n<li>V\u00e9rifier le r\u00e9sultat avec la commande ls depuis bioinfo-master1.ird.fr<\/li>\n<li>En utilisant rsync, transf\u00e9rer le fichier de bioinfo-san.ird.fr <code>\/share\/formation\/Slurm\/TPassembly\/TP.txt<\/code> sur votre PC<\/li>\n<\/ol>\n<hr \/>\n<p><a name=\"practice-4\"><\/a><\/p>\n<h3>Practice 4: Transf\u00e9rer des donn\u00e9es vers les noeuds<\/h3>\n<ol>\n<li>En utilisant rsync, transf\u00e9rer le r\u00e9pertoire <code>TP_reads_quality<\/code> situ\u00e9 dans <code>\/share\/formation\/<\/code> dans votre r\u00e9pertoire de travail<\/li>\n<li>V\u00e9rifier le r\u00e9sultat avec la commande ls<\/li>\n<\/ol>\n<hr \/>\n<p><a name=\"practice-5\"><\/a><\/p>\n<h3>Practice 5: Utiliser module environment pour charger ses outils<\/h3>\n<ol>\n<li>Charger les modules  FastQC\/0.12.1 et multiqc\/1.9  sur l'environnement bioinfo-itrop<\/li>\n<li>V\u00e9rifier si les modules sont charg\u00e9s<\/li>\n<\/ol>\n<hr \/>\n<p><a name=\"practice-6\"><\/a><\/p>\n<h3>Practice 6 : Lancer des analyses<\/h3>\n<h4>Utiliser FastQC<\/h4>\n<p>Lancer les commandes<\/p>\n<pre><code>cd \/scratch\/$USER\/TP_reads_quality\/<\/code><\/pre>\n<pre><code>mkdir .\/results\/<\/code><\/pre>\n<pre><code>fastqc --threads 1 --outdir .\/results\/ .\/reads\/*<\/code><\/pre>\n<h4>Utiliser multiqc<\/h4>\n<p>Lancer la commande<\/p>\n<pre><code>multiqc --filename MultiQC-from-FastQC_AAAA-MM-DD --title i-Trop-Cluster_ --outdir .\/ .\/results\/<\/code><\/pre>\n<hr \/>\n<p><a name=\"practice-7\"><\/a><\/p>\n<h3>Practice 7: Transf\u00e9rer des donn\u00e9es vers le serveur san puis sa machine <\/h3>\n<ol>\n<li>En utilisant rsync, transf\u00e9rer les r\u00e9sultats de <code>\/scratch\/login<\/code> vers votre <code>\/users\/login<\/code> <\/li>\n<li>V\u00e9rifier si le transfert est OK avec ls<\/li>\n<li>En utilisant rsync transf\u00e9rer les resultats vers votre ordinateur<\/li>\n<\/ol>\n<hr \/>\n<p><a name=\"practice-8\"><\/a><\/p>\n<h3>Practice 8: Supprimer son r\u00e9pertoire temporaire<\/h3>\n<pre><code>cd \/scratch\nrm -r login<\/code><\/pre>\n<pre><code>exit<\/code><\/pre>\n<hr \/>\n<p><a name=\"practice-9\"><\/a><\/p>\n<h3>Practice 9: Lancer  un job via sbatch<\/h3>\n<p>En suivant les diff\u00e9rentes \u00e9tapes effectu\u00e9es jusqu'ici, cr\u00e9er un script our lancer les analyses du practice6:<\/p>\n<p>1ere \u00e9tape: cr\u00e9er une section Slurm dans votre script <\/p>\n<p>1) Donner un nom \u00e0 son job<\/p>\n<p>2) Pr\u00e9ciser son adresse email<\/p>\n<p>3) Choisir la partition short <\/p>\n<p>2eme \u00e9tape : taper  les commandes que vous voulez que le script lance:<\/p>\n<p>1) cr\u00e9er un r\u00e9pertoire personnel dans \/scratch avec <code>mkdir<\/code><\/p>\n<p>2) En utilisant rsync, transf\u00e9rer le r\u00e9pertoire <code>TP_reads_quality<\/code> situ\u00e9 dans <code>\/share\/formation\/<\/code> dans votre r\u00e9pertoire de travail<\/p>\n<p>3) Charger les modules  FastQC\/0.12.1 et multiqc\/1.9  sur l'environnement bioinfo-itrop<\/p>\n<p>4) Dans le r\u00e9pertoire <code>TP_reads_quality<\/code>, lancer les commandes suivantes:<\/p>\n<pre><code>mkdir .\/results\/<\/code><\/pre>\n<pre><code>fastqc --threads 1 --outdir .\/results\/ .\/reads\/*<\/code><\/pre>\n<pre><code>multiqc --filename MultiQC-from-FastQC_AAAA-MM-DD --title i-Trop-Cluster_ --outdir .\/ .\/results\/<\/code><\/pre>\n<p>5) En utilisant rsync, transf\u00e9rer ses results depuis le <code>\/scratch\/login<\/code> vers son <code>\/home\/login<\/code> <\/p>\n<p>6) Suppression du r\u00e9pertoire personnel de <code>\/scratch<\/code><\/p>\n<p>Lancer les commandes suivantes pour avoir des infos sur le job termin\u00e9 :<\/p>\n<pre><code>seff &lt;JOB_ID&gt;\nsacct --format=JobID,elapsed,ncpus,ntasks,state,node -j &lt;JOB_ID&gt;<\/code><\/pre>\n<h2>Bonus:<\/h2>\n<p>lancement d'une analyse en 4 \u00e9tapes:<\/p>\n<p>1) Effectuer un alignement multiple avec l'outil nucmer <\/p>\n<p>2) Filtrer ces alignments avec l'outil delta-filter <\/p>\n<p>3) G\u00e9n\u00e9rer un tableau facile \u00e0 parser avec l'outil show-coords<\/p>\n<p>4) G\u00e9n\u00e9rer une image png avec mummerplot<\/p>\n<ul>\n<li>\n<p>R\u00e9cup\u00e9rer  le script \/projects\/medium\/formation\/Slurm\/scripts\/alignment_slurm.sh dans son \/home\/login<\/p>\n<\/li>\n<li>\n<p>modifier la section Slurm section et les variables<\/p>\n<\/li>\n<li>\n<p>lancer le script avec sbatch:<\/p>\n<\/li>\n<\/ul>\n<pre><code>sbatch alignment.sh<\/code><\/pre>\n<ul>\n<li>\n<p>Taper <code>ls -altr<\/code> dans votre <code>\/home\/login<\/code>. Que constatez-vous?<\/p>\n<\/li>\n<li>\n<p>Lancer les commandes suivantes pour obtenir  des infos sur le job termin\u00e9:<\/p>\n<\/li>\n<\/ul>\n<pre><code>seff &lt;JOB_ID&gt;\nsacct --format=JobID,elapsed,ncpus,ntasks,state,node -j &lt;JOB_ID&gt;<\/code><\/pre>\n<ul>\n<li>\n<p>Ouvrir filezilla et r\u00e9cup\u00e9rer l'image png sur votre ordinateur<\/p>\n<\/li>\n<li>\n<p>Lancer la commande suivante pour nettoyer le  \/scratch du noeud<\/p>\n<\/li>\n<\/ul>\n<pre><code>sh \/opt\/scripts\/scratch-scripts\/scratch_use.sh<\/code><\/pre>\n<p>et choisir le num\u00e9ro de noeud utilis\u00e9<\/p>\n<hr \/>\n<h3>Liens<\/h3>\n<p><a name=\"links\"><\/a><\/p>\n<ul>\n<li>Cours li\u00e9s : <a href=\"https:\/\/itrop.ird.fr\/wordpress\/index.php\/trainings-2019-linux-for-dummies\/\">Linux for Dummies<\/a><\/li>\n<li>Tutoriaux : <a href=\"https:\/\/itrop.ird.fr\/wordpress\/index.php\/linux-tutorial\/\">Linux Command-Line Cheat Sheet<\/a><\/li>\n<\/ul>\n<hr \/>\n<h3>Licence<\/h3>\n<p><a name=\"license\"><\/a><\/p>\n<div>\nCe cours est sous licence Creative Commons Attribution 4.0 International License (<a href=\"http:\/\/creativecommons.org\/licenses\/by-nc-sa\/4.0\/\">ici<\/a>).<br \/>\n<center><img decoding=\"async\" width=\"25%\" class=\"img-responsive\" src=\"http:\/\/creativecommons.org.nz\/wp-content\/uploads\/2012\/05\/by-nc-sa1.png\"\/><br \/>\n<\/center>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Practice initiation cluster i-Trop Description Exercices pour cluster i-Trop Cours li\u00e9 HPC Auteur Ndomassi TANDO (ndomassi.tando@ird.fr) Date de cr\u00e9ation 25\/11\/2019&hellip; <br \/> <a class=\"read-more\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/\">Lire la suite<\/a><\/p>\n","protected":false},"author":5,"featured_media":0,"parent":877,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"inline_featured_image":false,"footnotes":""},"class_list":["post-2585","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Trainings 2019 - HPC - Practice SLURM-fr - itrop<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Trainings 2019 - HPC - Practice SLURM-fr - itrop\" \/>\n<meta property=\"og:description\" content=\"Practice initiation cluster i-Trop Description Exercices pour cluster i-Trop Cours li\u00e9 HPC Auteur Ndomassi TANDO (ndomassi.tando@ird.fr) Date de cr\u00e9ation 25\/11\/2019&hellip; Lire la suite\" \/>\n<meta property=\"og:url\" content=\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/\" \/>\n<meta property=\"og:site_name\" content=\"itrop\" \/>\n<meta property=\"article:modified_time\" content=\"2026-03-18T11:12:39+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@ItropBioinfo\" \/>\n<meta name=\"twitter:label1\" content=\"Dur\u00e9e de lecture estim\u00e9e\" \/>\n\t<meta name=\"twitter:data1\" content=\"5 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/\",\"url\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/\",\"name\":\"Trainings 2019 - HPC - Practice SLURM-fr - itrop\",\"isPartOf\":{\"@id\":\"https:\/\/bioinfo.ird.fr\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#primaryimage\"},\"image\":{\"@id\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png\",\"datePublished\":\"2021-02-18T10:31:46+00:00\",\"dateModified\":\"2026-03-18T11:12:39+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#breadcrumb\"},\"inLanguage\":\"fr-FR\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"fr-FR\",\"@id\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#primaryimage\",\"url\":\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png\",\"contentUrl\":\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png\"},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Accueil\",\"item\":\"https:\/\/bioinfo.ird.fr\/index.php\/en\/front-page-2\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Trainings &#8211; FR\",\"item\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Trainings- HPC\",\"item\":\"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/\"},{\"@type\":\"ListItem\",\"position\":4,\"name\":\"Trainings 2019 &#8211; HPC &#8211; Practice SLURM-fr\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/bioinfo.ird.fr\/#website\",\"url\":\"https:\/\/bioinfo.ird.fr\/\",\"name\":\"itrop\",\"description\":\"\",\"publisher\":{\"@id\":\"https:\/\/bioinfo.ird.fr\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/bioinfo.ird.fr\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"fr-FR\"},{\"@type\":\"Organization\",\"@id\":\"https:\/\/bioinfo.ird.fr\/#organization\",\"name\":\"i-Trop\",\"url\":\"https:\/\/bioinfo.ird.fr\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"fr-FR\",\"@id\":\"https:\/\/bioinfo.ird.fr\/#\/schema\/logo\/image\/\",\"url\":\"https:\/\/bioinfo.ird.fr\/wp-content\/uploads\/2021\/10\/i-tropTwt5.png\",\"contentUrl\":\"https:\/\/bioinfo.ird.fr\/wp-content\/uploads\/2021\/10\/i-tropTwt5.png\",\"width\":1356,\"height\":1356,\"caption\":\"i-Trop\"},\"image\":{\"@id\":\"https:\/\/bioinfo.ird.fr\/#\/schema\/logo\/image\/\"},\"sameAs\":[\"https:\/\/x.com\/ItropBioinfo\"]}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Trainings 2019 - HPC - Practice SLURM-fr - itrop","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/","og_locale":"fr_FR","og_type":"article","og_title":"Trainings 2019 - HPC - Practice SLURM-fr - itrop","og_description":"Practice initiation cluster i-Trop Description Exercices pour cluster i-Trop Cours li\u00e9 HPC Auteur Ndomassi TANDO (ndomassi.tando@ird.fr) Date de cr\u00e9ation 25\/11\/2019&hellip; Lire la suite","og_url":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/","og_site_name":"itrop","article_modified_time":"2026-03-18T11:12:39+00:00","og_image":[{"url":"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png","type":"","width":"","height":""}],"twitter_card":"summary_large_image","twitter_site":"@ItropBioinfo","twitter_misc":{"Dur\u00e9e de lecture estim\u00e9e":"5 minutes"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/","url":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/","name":"Trainings 2019 - HPC - Practice SLURM-fr - itrop","isPartOf":{"@id":"https:\/\/bioinfo.ird.fr\/#website"},"primaryImageOfPage":{"@id":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#primaryimage"},"image":{"@id":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#primaryimage"},"thumbnailUrl":"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png","datePublished":"2021-02-18T10:31:46+00:00","dateModified":"2026-03-18T11:12:39+00:00","breadcrumb":{"@id":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#breadcrumb"},"inLanguage":"fr-FR","potentialAction":[{"@type":"ReadAction","target":["https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/"]}]},{"@type":"ImageObject","inLanguage":"fr-FR","@id":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#primaryimage","url":"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png","contentUrl":"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/tpLinux\/osWin.png"},{"@type":"BreadcrumbList","@id":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/trainings-2019-hpc-practice-slurm-fr\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Accueil","item":"https:\/\/bioinfo.ird.fr\/index.php\/en\/front-page-2\/"},{"@type":"ListItem","position":2,"name":"Trainings &#8211; FR","item":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/"},{"@type":"ListItem","position":3,"name":"Trainings- HPC","item":"https:\/\/bioinfo.ird.fr\/index.php\/trainings-fr\/trainings-2019-hpc\/"},{"@type":"ListItem","position":4,"name":"Trainings 2019 &#8211; HPC &#8211; Practice SLURM-fr"}]},{"@type":"WebSite","@id":"https:\/\/bioinfo.ird.fr\/#website","url":"https:\/\/bioinfo.ird.fr\/","name":"itrop","description":"","publisher":{"@id":"https:\/\/bioinfo.ird.fr\/#organization"},"potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/bioinfo.ird.fr\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"fr-FR"},{"@type":"Organization","@id":"https:\/\/bioinfo.ird.fr\/#organization","name":"i-Trop","url":"https:\/\/bioinfo.ird.fr\/","logo":{"@type":"ImageObject","inLanguage":"fr-FR","@id":"https:\/\/bioinfo.ird.fr\/#\/schema\/logo\/image\/","url":"https:\/\/bioinfo.ird.fr\/wp-content\/uploads\/2021\/10\/i-tropTwt5.png","contentUrl":"https:\/\/bioinfo.ird.fr\/wp-content\/uploads\/2021\/10\/i-tropTwt5.png","width":1356,"height":1356,"caption":"i-Trop"},"image":{"@id":"https:\/\/bioinfo.ird.fr\/#\/schema\/logo\/image\/"},"sameAs":["https:\/\/x.com\/ItropBioinfo"]}]}},"_links":{"self":[{"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/pages\/2585","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/comments?post=2585"}],"version-history":[{"count":21,"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/pages\/2585\/revisions"}],"predecessor-version":[{"id":4854,"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/pages\/2585\/revisions\/4854"}],"up":[{"embeddable":true,"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/pages\/877"}],"wp:attachment":[{"href":"https:\/\/bioinfo.ird.fr\/index.php\/wp-json\/wp\/v2\/media?parent=2585"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}