![\"\"](\"https:\/\/southgreenplatform.github.io\/trainings\/\/images\/trainings-metabarcoding.png\")
\n<\/td>\nMetabarcoding analyses (using FROGS and Phyloseq)<\/h1>\n
\nThis course offers an introduction to metabarcoding analyses at two different levels\/steps: bioinformatics with FROGS pipeline in the Galaxy environment, biostatistics with PhyloSeq R package. This includes preprocessing, clustering and OTU picking, taxonomic assignation, estimation of diversity, visualization of statistics results.\n<\/td>\n<\/tr>\n<\/table>\n
Prerequisites<\/h3>\n
Galaxy<\/a>, R knowledge, Linux<\/p>\nProgram<\/h3>\n
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Learning objectives<\/h3>\n
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Training material<\/h3>\n
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Instructors<\/h3>\n
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Trainings<\/h3>\n
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\n Date<\/strong><\/th>\n Location<\/strong><\/th>\n Topics<\/strong><\/th>\n Participants<\/strong><\/th>\n Instructors<\/strong><\/th>\n Links<\/strong><\/th>\n Units<\/strong><\/th>\n<\/tr>\n<\/thead>\n\n \n 2019<\/td>\n Montpellier, France<\/td>\n Introduction to transcriptomics analyses<\/td>\n 20<\/td>\n FM, FM, JO, JR, MS<\/td>\n <\/td>\n UMR ASTRE, BGPI, DIADE, IPME<\/td>\n<\/tr>\n \n 2018<\/td>\n Montpellier, France<\/td>\n Introduction to transcriptomics analyses<\/td>\n 20<\/td>\n FC, JO, AD<\/td>\n <\/td>\n UMR DIADE, IPME, BOREA, QUALISUD<\/td>\n<\/tr>\n \n 2016<\/td>\n Ouagadougou, Burkina<\/td>\n Bioinformatics applied to genomics<\/td>\n 20<\/td>\n FM, AD<\/td>\n <\/td>\n IRD<\/td>\n<\/tr>\n \n 2015<\/td>\n Hanoi, Vietnam<\/td>\n Bioinformatics applied to genomics<\/td>\n 20<\/td>\n AD<\/td>\n <\/td>\n LMI Rice<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"