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General Plant Resources:
 | PlantGDB : Tools and resources for plant genomics. |
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 | Phytozome comparative genomics in green plants. |
Coffea:
 | SOL Genomics Network contains genomic, genetic, phenotypic and taxonomic information for Euasterid clade: Solanaceae (tomato, potato, eggplant, pepper, petunia) and Rubiaceae (coffee). |
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 | CoffeaDNA is a site about coffee genomics in Italy. |
Rice:
 | OrygenesDB is an interactive tool for Rice reverse genetics |
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 | Gramene is a resource for comparative grass genomics. |
 | OryzaTagLine is an integrative database for the functional analysis of the rice genome. |
Arabidopsis:
 | TAIR : Arabidopsis Information Resource |
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Grape:
 | Grape Genome Browser at Genoscope. |
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Maize:
 | MaizeGDB is an informatics service to researchers focused on the plant crop and model organism Zea Mays. |
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Bioinformatics:
 | NCBI |
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 | EMBL - EBI |
 | ExPASy proteomics server. |
 | Uniprot . |
 | KEGG Kyoto Encyclopedia of Genes and Genomes. |
 | Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models |
 | EMBOSS is "The European Molecular Biology Open Software Suite" |
 | miRBase is a searchable database of published miRNA sequences and annotation. |
 | The GeneOntology project has the aim of standardizing the representation of gene and gene product attributes across species and databases. |
 | The Plant Ontology Consortium is developing controlled vocabularies (ontologies) that describe plant anatomical and morphological structures and growth and developmental stages for all plants. |
 | The OrthologID automates gene orthology determination within a character-based phylogenetic framework. |
Collaborative projects:
 | ARCAD (Agropolis Resource Centre for Crop Conservation, Adaptation and Diversity) |
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 | GnpAnnot is a collaborative system for structural and functional annotation (application in Coffea). |
 | SNiPlay is a web-based tool for SNP and polymorphism analysis. |