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The IRD bioinformatics servers provides informatics and bioinformatics resources to four IRD research units (Plant and Health units) and their partners :
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Tools and databases:
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Rice-BRCdb is an information system developed to manage information on rice genetic resources collected or produced by IRD or CIRAD institutes. | |
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MoccaDB is a comprehensive web resource for researchers working on Coffea genus, the Rubiaceae family or related species. | |
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CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. more | |
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DiffExDB is a web-based tool for exploring gene expression (microarray or RNA-Seq experiments) and differential expression analyses. | |
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The Xanthomonas utilities website offers a collection of bioinformatic tools developed for the analysis of Xanthomonas genomes. | |
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VooIRD is a web-based toolkit used to medical questionnaire to HIV. This tool is based on Voozanno developped by Epiconcept |
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RegaDB is a HIV database and analysis management environnement. It is used to HIV analysis tool. It is developped by K.U. Leuven | |
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PINS-ARIM is web_based tool to arthropodes hematophages and soil nematodes collections management. | |
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P-TRAP software (for Panicle TRAits Phenotyping), is a free and open source applica- tion for high-throughput measurements of panicle architecture and seed-related traits. | |
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INsPECT (INtracellular ParasitE CounTer) is a free and open source software dedicated to automate quantification of Leishmania intracellular parasites based on fluorescent DNA images |
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Collaborative projects/developments (South Green Network) |
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Galaxy is a platform dedicated to Next Generation Sequencing (NGS) data analyses... |
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SNiPlay is a web-based tool for SNP and polymorphism analysis. |
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Coffee Genome Hub is a genomics and genetics resource for Coffee species. |